![]() Hi Brad, I got a few questions regarding the recipes. • I'm wondering why dbSNP is downloaded from the archive subfolder (ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/VCF/archive/All_20160407.vcf.gz), instead of the latest (ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b147_GRCh38p2/VCF/All_20160527.vcf.gz)? Dbsnp 138 Vcf Download• dbSNP for hg19 (unlike for hg38) is downloaded from another source, and is very outdated - v138 vs. Any specific reason for keeping it that? • There is no recipe at all for COSMIC for hg38. • ClinVar for hg38 is downloaded from archive and very outdated ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh38/archive/2015, but it should always correspond to the used version of dbSNP in order to make annotations consistent. • And for hg19, there is not ClinVar recipe at all. If you have no objections, I can fix and update all human recipes and make a pull request. The 129 and 130 versions use hg18 as a reference genome, 131, 132, 135, 137, 138 and 141 use hg19 and 143 uses hg38. Annotation database dbSNP (version hg38_143) Description: dbSNP version 143, created using vcf file downloaded from NCBI Database type: variant Reference genome hg38: chr, pos, ref,. Boston acoustics avp7 manual muscle. Download as many books as you like (Personal use) • 3. Please read our description and our privacy and policy page. How it works: • 1. Register a free 1 month Trial Account. We hope you glad to visit our website. Download Dbsnp 138.hg19.vcfI also added recipes for refGene files () that I would like to use for BED annotation for Seq2C (and hopefully for other purposes), let me know if that's a correct way to do it or I should fix something, and if it is okay with out at all.
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